Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFL30263.1 | EFL32484.1 | SSQG_00781 | SSQG_03002 | Thioredoxin. | Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family. | 0.862 |
EFL30263.1 | EFL34757.1 | SSQG_00781 | SSQG_05275 | Thioredoxin. | Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | 0.883 |
EFL30263.1 | EFL35320.1 | SSQG_00781 | SSQG_05838 | Thioredoxin. | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.883 |
EFL30263.1 | dut | SSQG_00781 | SSQG_05904 | Thioredoxin. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.436 |
EFL30853.1 | EFL32484.1 | SSQG_01371 | SSQG_03002 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family. | 0.879 |
EFL31107.1 | EFL32484.1 | SSQG_01625 | SSQG_03002 | GntR family transcriptional regulator. | Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family. | 0.832 |
EFL32482.1 | EFL32483.1 | SSQG_03000 | SSQG_03001 | Sugar ABC transporter solute-binding protein. | Conserved hypothetical protein. | 0.730 |
EFL32482.1 | EFL32484.1 | SSQG_03000 | SSQG_03002 | Sugar ABC transporter solute-binding protein. | Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family. | 0.710 |
EFL32482.1 | murA | SSQG_03000 | SSQG_03003 | Sugar ABC transporter solute-binding protein. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.649 |
EFL32483.1 | EFL32482.1 | SSQG_03001 | SSQG_03000 | Conserved hypothetical protein. | Sugar ABC transporter solute-binding protein. | 0.730 |
EFL32483.1 | EFL32484.1 | SSQG_03001 | SSQG_03002 | Conserved hypothetical protein. | Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family. | 0.836 |
EFL32483.1 | murA | SSQG_03001 | SSQG_03003 | Conserved hypothetical protein. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.776 |
EFL32484.1 | EFL30263.1 | SSQG_03002 | SSQG_00781 | Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family. | Thioredoxin. | 0.862 |
EFL32484.1 | EFL30853.1 | SSQG_03002 | SSQG_01371 | Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family. | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.879 |
EFL32484.1 | EFL31107.1 | SSQG_03002 | SSQG_01625 | Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family. | GntR family transcriptional regulator. | 0.832 |
EFL32484.1 | EFL32482.1 | SSQG_03002 | SSQG_03000 | Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family. | Sugar ABC transporter solute-binding protein. | 0.710 |
EFL32484.1 | EFL32483.1 | SSQG_03002 | SSQG_03001 | Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family. | Conserved hypothetical protein. | 0.836 |
EFL32484.1 | EFL34040.1 | SSQG_03002 | SSQG_04558 | Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family. | Secreted protein. | 0.862 |
EFL32484.1 | EFL34757.1 | SSQG_03002 | SSQG_05275 | Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family. | Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | 0.997 |
EFL32484.1 | EFL35320.1 | SSQG_03002 | SSQG_05838 | Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family. | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.998 |
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