Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFL32902.1 | EFL32906.1 | SSQG_03420 | SSQG_03424 | TetR-family transcriptional regulator. | Pyridoxamine 5'-phosphate oxidase. | 0.541 |
EFL32903.1 | EFL32904.1 | SSQG_03421 | SSQG_03423 | Conserved hypothetical protein. | Thiolase. | 0.553 |
EFL32903.1 | EFL32906.1 | SSQG_03421 | SSQG_03424 | Conserved hypothetical protein. | Pyridoxamine 5'-phosphate oxidase. | 0.543 |
EFL32904.1 | EFL32903.1 | SSQG_03423 | SSQG_03421 | Thiolase. | Conserved hypothetical protein. | 0.553 |
EFL32904.1 | EFL32906.1 | SSQG_03423 | SSQG_03424 | Thiolase. | Pyridoxamine 5'-phosphate oxidase. | 0.720 |
EFL32906.1 | EFL32902.1 | SSQG_03424 | SSQG_03420 | Pyridoxamine 5'-phosphate oxidase. | TetR-family transcriptional regulator. | 0.541 |
EFL32906.1 | EFL32903.1 | SSQG_03424 | SSQG_03421 | Pyridoxamine 5'-phosphate oxidase. | Conserved hypothetical protein. | 0.543 |
EFL32906.1 | EFL32904.1 | SSQG_03424 | SSQG_03423 | Pyridoxamine 5'-phosphate oxidase. | Thiolase. | 0.720 |
EFL32906.1 | EFL32907.1 | SSQG_03424 | SSQG_03425 | Pyridoxamine 5'-phosphate oxidase. | Methyltransferase. | 0.566 |
EFL32906.1 | EFL34301.1 | SSQG_03424 | SSQG_04819 | Pyridoxamine 5'-phosphate oxidase. | YjeF family protein; Unextendable partial coding region. | 0.543 |
EFL32906.1 | EFL35107.1 | SSQG_03424 | SSQG_05625 | Pyridoxamine 5'-phosphate oxidase. | Pyridoxal kinase. | 0.849 |
EFL32906.1 | gcvP | SSQG_03424 | SSQG_01250 | Pyridoxamine 5'-phosphate oxidase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.475 |
EFL32906.1 | pdxH | SSQG_03424 | SSQG_03473 | Pyridoxamine 5'-phosphate oxidase. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.908 |
EFL32906.1 | pdxS | SSQG_03424 | SSQG_01393 | Pyridoxamine 5'-phosphate oxidase. | Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | 0.902 |
EFL32906.1 | pdxT | SSQG_03424 | SSQG_01392 | Pyridoxamine 5'-phosphate oxidase. | Glutamine amidotransferase subunit pdxT; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | 0.900 |
EFL32907.1 | EFL32906.1 | SSQG_03425 | SSQG_03424 | Methyltransferase. | Pyridoxamine 5'-phosphate oxidase. | 0.566 |
EFL32907.1 | gcvP | SSQG_03425 | SSQG_01250 | Methyltransferase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.524 |
EFL34301.1 | EFL32906.1 | SSQG_04819 | SSQG_03424 | YjeF family protein; Unextendable partial coding region. | Pyridoxamine 5'-phosphate oxidase. | 0.543 |
EFL34301.1 | pdxH | SSQG_04819 | SSQG_03473 | YjeF family protein; Unextendable partial coding region. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.543 |
EFL34301.1 | pdxS | SSQG_04819 | SSQG_01393 | YjeF family protein; Unextendable partial coding region. | Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | 0.592 |
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