STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL33429.1Integral membrane protein. (393 aa)    
Predicted Functional Partners:
EFL33430.1
Integral membrane protein.
 
    
0.874
EFL33427.1
Conserved hypothetical protein.
 
   
 0.775
EFL33428.1
Para-aminobenzoate synthase component II.
       0.629
EFL33426.1
Sortase.
 
    
0.604
crgA
Membrane protein; Involved in cell division; Belongs to the CrgA family.
       0.541
EFL33425.1
Membrane spanning protein DUF881.
       0.541
EFL31003.1
Transmembrane transporter.
  
     0.533
EFL30856.1
Secreted protein.
  
     0.496
EFL32047.1
RNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
      
 0.470
EFL35392.1
Conserved hypothetical protein.
  
     0.455
Your Current Organism:
Streptomyces viridochromogenes
NCBI taxonomy Id: 591159
Other names: S. viridochromogenes DSM 40736, Streptomyces viridochromogenes DSM 40736, Streptomyces viridochromogenes str. DSM 40736, Streptomyces viridochromogenes strain DSM 40736
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.