Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFL30832.1 | EFL31814.1 | SSQG_01350 | SSQG_02332 | Guanylate kinase. | Conserved hypothetical protein; Truncated CDS. | 0.999 |
EFL30832.1 | rplI | SSQG_01350 | SSQG_03893 | Guanylate kinase. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.993 |
EFL30832.1 | rplK | SSQG_01350 | SSQG_04739 | Guanylate kinase. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.994 |
EFL30832.1 | rplT | SSQG_01350 | SSQG_01479 | Guanylate kinase. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.994 |
EFL30832.1 | rplU | SSQG_01350 | SSQG_02614 | Guanylate kinase. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.994 |
EFL30832.1 | rpmA | SSQG_01350 | SSQG_02613 | Guanylate kinase. | Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.994 |
EFL30832.1 | rpsC | SSQG_01350 | SSQG_04777 | Guanylate kinase. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
EFL30832.1 | rpsD | SSQG_01350 | SSQG_01375 | Guanylate kinase. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
EFL30832.1 | rpsF | SSQG_01350 | SSQG_03896 | Guanylate kinase. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.990 |
EFL30832.1 | rpsN | SSQG_01350 | SSQG_04367 | Guanylate kinase. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.998 |
EFL31814.1 | EFL30832.1 | SSQG_02332 | SSQG_01350 | Conserved hypothetical protein; Truncated CDS. | Guanylate kinase. | 0.999 |
EFL31814.1 | rplK | SSQG_02332 | SSQG_04739 | Conserved hypothetical protein; Truncated CDS. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.999 |
EFL31814.1 | rplU | SSQG_02332 | SSQG_02614 | Conserved hypothetical protein; Truncated CDS. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.447 |
EFL31814.1 | rpmA | SSQG_02332 | SSQG_02613 | Conserved hypothetical protein; Truncated CDS. | Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.541 |
EFL31814.1 | rpsC | SSQG_02332 | SSQG_04777 | Conserved hypothetical protein; Truncated CDS. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
EFL31814.1 | rpsD | SSQG_02332 | SSQG_01375 | Conserved hypothetical protein; Truncated CDS. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
EFL31814.1 | rpsN | SSQG_02332 | SSQG_04367 | Conserved hypothetical protein; Truncated CDS. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.999 |
rplI | EFL30832.1 | SSQG_03893 | SSQG_01350 | Ribosomal protein L9; Binds to the 23S rRNA. | Guanylate kinase. | 0.993 |
rplI | rplK | SSQG_03893 | SSQG_04739 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.999 |
rplI | rplT | SSQG_03893 | SSQG_01479 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
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