Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFL30499.1 | EFL34743.1 | SSQG_01017 | SSQG_05261 | Integral membrane protein. | Integral membrane protein. | 0.461 |
EFL34740.1 | EFL34743.1 | SSQG_05258 | SSQG_05261 | SMR-type multi-drug efflux transporter. | Integral membrane protein. | 0.677 |
EFL34740.1 | EFL34744.1 | SSQG_05258 | SSQG_05262 | SMR-type multi-drug efflux transporter. | Conserved hypothetical protein; Belongs to the SOS response-associated peptidase family. | 0.647 |
EFL34740.1 | EFL34745.1 | SSQG_05258 | SSQG_05263 | SMR-type multi-drug efflux transporter. | Conserved hypothetical protein. | 0.645 |
EFL34740.1 | EFL34746.1 | SSQG_05258 | SSQG_05264 | SMR-type multi-drug efflux transporter. | RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily. | 0.620 |
EFL34740.1 | EFL34747.1 | SSQG_05258 | SSQG_05265 | SMR-type multi-drug efflux transporter. | Anti-sigma factor. | 0.623 |
EFL34740.1 | EFL34748.1 | SSQG_05258 | SSQG_05266 | SMR-type multi-drug efflux transporter. | Integral membrane protein. | 0.481 |
EFL34740.1 | EFL34749.1 | SSQG_05258 | SSQG_05267 | SMR-type multi-drug efflux transporter. | Lipoprotein. | 0.606 |
EFL34740.1 | aroA | SSQG_05258 | SSQG_05260 | SMR-type multi-drug efflux transporter. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.737 |
EFL34740.1 | rsgA | SSQG_05258 | SSQG_05259 | SMR-type multi-drug efflux transporter. | Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.747 |
EFL34743.1 | EFL30499.1 | SSQG_05261 | SSQG_01017 | Integral membrane protein. | Integral membrane protein. | 0.461 |
EFL34743.1 | EFL34740.1 | SSQG_05261 | SSQG_05258 | Integral membrane protein. | SMR-type multi-drug efflux transporter. | 0.677 |
EFL34743.1 | EFL34744.1 | SSQG_05261 | SSQG_05262 | Integral membrane protein. | Conserved hypothetical protein; Belongs to the SOS response-associated peptidase family. | 0.783 |
EFL34743.1 | EFL34745.1 | SSQG_05261 | SSQG_05263 | Integral membrane protein. | Conserved hypothetical protein. | 0.778 |
EFL34743.1 | EFL34746.1 | SSQG_05261 | SSQG_05264 | Integral membrane protein. | RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily. | 0.643 |
EFL34743.1 | EFL34747.1 | SSQG_05261 | SSQG_05265 | Integral membrane protein. | Anti-sigma factor. | 0.708 |
EFL34743.1 | EFL34748.1 | SSQG_05261 | SSQG_05266 | Integral membrane protein. | Integral membrane protein. | 0.559 |
EFL34743.1 | EFL34749.1 | SSQG_05261 | SSQG_05267 | Integral membrane protein. | Lipoprotein. | 0.655 |
EFL34743.1 | aroA | SSQG_05261 | SSQG_05260 | Integral membrane protein. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.763 |
EFL34743.1 | rsgA | SSQG_05261 | SSQG_05259 | Integral membrane protein. | Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.752 |
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