STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL34897.1ABC transporter. (249 aa)    
Predicted Functional Partners:
EFL34898.1
Nodulation ABC transporter NodI.
 
 
  0.970
EFL34896.1
ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.866
EFL33473.1
Nodulation ABC transporter NodI.
 
 
  0.787
EFL33861.1
Nodulation ABC transporter NodI.
 
 
  0.778
EFL31672.1
Nodulation ABC transporter NodI.
 
 
  0.777
EFL34520.1
Nodulation ABC transporter NodI.
 
 
  0.777
EFL34290.1
Nodulation ABC transporter NodI.
 
 
  0.771
EFL34899.1
tetR-family transcriptional regulator.
 
     0.756
EFL32819.1
Nodulation ABC transporter NodI.
 
 
  0.754
EFL34900.1
3-hydroxybutyryl-CoA dehydrogenase.
       0.689
Your Current Organism:
Streptomyces viridochromogenes
NCBI taxonomy Id: 591159
Other names: S. viridochromogenes DSM 40736, Streptomyces viridochromogenes DSM 40736, Streptomyces viridochromogenes str. DSM 40736, Streptomyces viridochromogenes strain DSM 40736
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.