Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFL31221.1 | EFL31223.1 | SSQG_01739 | SSQG_01741 | Conserved hypothetical protein. | Alkaline shock protein. | 0.813 |
EFL31221.1 | EFL35109.1 | SSQG_01739 | SSQG_05627 | Conserved hypothetical protein. | Dihydroxyacetone kinase. | 0.546 |
EFL31223.1 | EFL31221.1 | SSQG_01741 | SSQG_01739 | Alkaline shock protein. | Conserved hypothetical protein. | 0.813 |
EFL31223.1 | EFL35109.1 | SSQG_01741 | SSQG_05627 | Alkaline shock protein. | Dihydroxyacetone kinase. | 0.546 |
EFL32069.1 | EFL35109.1 | SSQG_02587 | SSQG_05627 | Conserved hypothetical protein. | Dihydroxyacetone kinase. | 0.992 |
EFL32381.1 | EFL35109.1 | SSQG_02899 | SSQG_05627 | N-acetylglucosamine-6-phosphate deacetylase; Belongs to the HAD-like hydrolase superfamily. | Dihydroxyacetone kinase. | 0.575 |
EFL35109.1 | EFL31221.1 | SSQG_05627 | SSQG_01739 | Dihydroxyacetone kinase. | Conserved hypothetical protein. | 0.546 |
EFL35109.1 | EFL31223.1 | SSQG_05627 | SSQG_01741 | Dihydroxyacetone kinase. | Alkaline shock protein. | 0.546 |
EFL35109.1 | EFL32069.1 | SSQG_05627 | SSQG_02587 | Dihydroxyacetone kinase. | Conserved hypothetical protein. | 0.992 |
EFL35109.1 | EFL32381.1 | SSQG_05627 | SSQG_02899 | Dihydroxyacetone kinase. | N-acetylglucosamine-6-phosphate deacetylase; Belongs to the HAD-like hydrolase superfamily. | 0.575 |
EFL35109.1 | EFL35113.1 | SSQG_05627 | SSQG_05631 | Dihydroxyacetone kinase. | RsmD family RNA methyltransferase. | 0.617 |
EFL35109.1 | EFL35115.1 | SSQG_05627 | SSQG_05633 | Dihydroxyacetone kinase. | Conserved hypothetical protein. | 0.610 |
EFL35109.1 | coaD | SSQG_05627 | SSQG_05632 | Dihydroxyacetone kinase. | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.619 |
EFL35109.1 | recG | SSQG_05627 | SSQG_05630 | Dihydroxyacetone kinase. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.837 |
EFL35109.1 | rnc | SSQG_05627 | SSQG_05636 | Dihydroxyacetone kinase. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.549 |
EFL35109.1 | rpmB-2 | SSQG_05627 | SSQG_05626 | Dihydroxyacetone kinase. | Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.733 |
EFL35113.1 | EFL35109.1 | SSQG_05631 | SSQG_05627 | RsmD family RNA methyltransferase. | Dihydroxyacetone kinase. | 0.617 |
EFL35113.1 | EFL35115.1 | SSQG_05631 | SSQG_05633 | RsmD family RNA methyltransferase. | Conserved hypothetical protein. | 0.834 |
EFL35113.1 | coaD | SSQG_05631 | SSQG_05632 | RsmD family RNA methyltransferase. | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.991 |
EFL35113.1 | recG | SSQG_05631 | SSQG_05630 | RsmD family RNA methyltransferase. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.762 |
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