STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL35169.1Phosphonate C-P lyase system protein PhnK. (249 aa)    
Predicted Functional Partners:
EFL30157.1
Predicted protein.
  
 0.998
EFL35167.1
Glyoxalase/bleomycin resistance protein/dioxygenase.
     
 0.902
EFL35168.1
Conserved hypothetical protein.
       0.876
EFL32675.1
ABC transporter integral membrane protein.
 
  0.836
EFL30614.1
ABC transporter integral membrane protein.
 
  0.831
EFL31345.1
Peptide ABC transporter permease.
  
  0.802
EFL33446.1
ABC transporter integral membrane protein.
  
  0.802
EFL36655.1
Predicted protein.
  
  0.802
EFL35171.1
Transcriptional regulatory protein.
     
 0.766
EFL30455.1
Ribose ABC transporter.
  
     0.748
Your Current Organism:
Streptomyces viridochromogenes
NCBI taxonomy Id: 591159
Other names: S. viridochromogenes DSM 40736, Streptomyces viridochromogenes DSM 40736, Streptomyces viridochromogenes str. DSM 40736, Streptomyces viridochromogenes strain DSM 40736
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.