Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFL35320.1 | EFL35322.1 | SSQG_05838 | SSQG_05840 | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Conserved hypothetical protein. | 0.541 |
EFL35320.1 | nrdR | SSQG_05838 | SSQG_05837 | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.914 |
EFL35320.1 | rnhB | SSQG_05838 | SSQG_05845 | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.472 |
EFL35321.1 | EFL35322.1 | SSQG_05839 | SSQG_05840 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.766 |
EFL35321.1 | EFL35323.1 | SSQG_05839 | SSQG_05841 | Conserved hypothetical protein. | Alpha-ribazole phosphatase; Belongs to the phosphoglycerate mutase family. | 0.687 |
EFL35321.1 | EFL35324.1 | SSQG_05839 | SSQG_05842 | Conserved hypothetical protein. | Hydrolase. | 0.682 |
EFL35322.1 | EFL35320.1 | SSQG_05840 | SSQG_05838 | Conserved hypothetical protein. | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.541 |
EFL35322.1 | EFL35321.1 | SSQG_05840 | SSQG_05839 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.766 |
EFL35322.1 | EFL35323.1 | SSQG_05840 | SSQG_05841 | Conserved hypothetical protein. | Alpha-ribazole phosphatase; Belongs to the phosphoglycerate mutase family. | 0.749 |
EFL35322.1 | EFL35324.1 | SSQG_05840 | SSQG_05842 | Conserved hypothetical protein. | Hydrolase. | 0.743 |
EFL35322.1 | nrdR | SSQG_05840 | SSQG_05837 | Conserved hypothetical protein. | Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.537 |
EFL35322.1 | rnhB | SSQG_05840 | SSQG_05845 | Conserved hypothetical protein. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.541 |
EFL35323.1 | EFL35321.1 | SSQG_05841 | SSQG_05839 | Alpha-ribazole phosphatase; Belongs to the phosphoglycerate mutase family. | Conserved hypothetical protein. | 0.687 |
EFL35323.1 | EFL35322.1 | SSQG_05841 | SSQG_05840 | Alpha-ribazole phosphatase; Belongs to the phosphoglycerate mutase family. | Conserved hypothetical protein. | 0.749 |
EFL35323.1 | EFL35324.1 | SSQG_05841 | SSQG_05842 | Alpha-ribazole phosphatase; Belongs to the phosphoglycerate mutase family. | Hydrolase. | 0.864 |
EFL35323.1 | rnhB | SSQG_05841 | SSQG_05845 | Alpha-ribazole phosphatase; Belongs to the phosphoglycerate mutase family. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.560 |
EFL35324.1 | EFL35321.1 | SSQG_05842 | SSQG_05839 | Hydrolase. | Conserved hypothetical protein. | 0.682 |
EFL35324.1 | EFL35322.1 | SSQG_05842 | SSQG_05840 | Hydrolase. | Conserved hypothetical protein. | 0.743 |
EFL35324.1 | EFL35323.1 | SSQG_05842 | SSQG_05841 | Hydrolase. | Alpha-ribazole phosphatase; Belongs to the phosphoglycerate mutase family. | 0.864 |
EFL35324.1 | rnhB | SSQG_05842 | SSQG_05845 | Hydrolase. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.541 |
page 1 of 2