STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cas1CRISPR-associated protein cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (322 aa)    
Predicted Functional Partners:
EFL35727.1
CRISPR-associated protein cas2.
 
 
 0.999
EFL35729.1
CRISPR-associated protein; Overlaps another CDS with the same product name.
 
  
 0.985
EFL35733.1
CRISPR-associated protein; Overlaps another CDS with the same product name.
 
  
 0.982
EFL35730.1
CRISPR-associated protein; Overlaps another CDS with the same product name.
 
  
 0.980
EFL35734.1
CRISPR-associated helicase.
 
  
 0.976
EFL35732.1
CRISPR-associated protein; Overlaps another CDS with the same product name.
 
  
 0.975
EFL35731.1
CRISPR-associated protein; Overlaps another CDS with the same product name.
 
  
 0.973
EFL31930.1
CRISPR-associated protein.
 
  
 0.886
EFL31929.1
CRISPR-associated protein cas5.
 
  
 0.865
EFL31934.1
CRISPR-associated helicase cas3.
 
  
 0.845
Your Current Organism:
Streptomyces viridochromogenes
NCBI taxonomy Id: 591159
Other names: S. viridochromogenes DSM 40736, Streptomyces viridochromogenes DSM 40736, Streptomyces viridochromogenes str. DSM 40736, Streptomyces viridochromogenes strain DSM 40736
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.