STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL36275.1Conserved hypothetical protein. (723 aa)    
Predicted Functional Partners:
EFL36274.1
Transcriptional regulator.
   
   0.582
EFL30309.1
Conserved hypothetical protein.
       0.528
EFL33075.1
Conserved hypothetical protein.
  
     0.483
EFL32164.1
Serine protease; Belongs to the peptidase S8 family.
  
     0.473
EFL29893.1
Radical SAM domain-containing protein.
  
     0.461
EFL35440.1
Radical SAM domain-containing protein.
  
     0.455
EFL37081.1
Conserved hypothetical protein.
  
     0.440
EFL30647.1
Predicted protein.
  
     0.425
EFL35518.1
Radical SAM domain-containing protein.
  
     0.425
Your Current Organism:
Streptomyces viridochromogenes
NCBI taxonomy Id: 591159
Other names: S. viridochromogenes DSM 40736, Streptomyces viridochromogenes DSM 40736, Streptomyces viridochromogenes str. DSM 40736, Streptomyces viridochromogenes strain DSM 40736
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.