STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL36329.1Conserved hypothetical protein; Truncated CDS. (341 aa)    
Predicted Functional Partners:
EFL36330.1
Protease.
 
     0.927
EFL36332.1
Conserved hypothetical protein.
 
     0.923
EFL36331.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.883
nhaA
Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
   
    0.608
EFL33026.1
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.559
EFL31298.1
Short-chain dehydrogenase/reductase SDR.
  
     0.533
EFL30324.1
Extracellular solute-binding protein family 1.
  
     0.479
EFL31098.1
Conserved hypothetical protein.
  
     0.460
EFL36810.1
Predicted protein.
  
     0.445
EFL34086.1
Predicted protein.
  
     0.439
Your Current Organism:
Streptomyces viridochromogenes
NCBI taxonomy Id: 591159
Other names: S. viridochromogenes DSM 40736, Streptomyces viridochromogenes DSM 40736, Streptomyces viridochromogenes str. DSM 40736, Streptomyces viridochromogenes strain DSM 40736
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.