STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL36662.1L-rhamnose catabolism isomerase. (386 aa)    
Predicted Functional Partners:
EFL36660.1
Rhamnulokinase.
 
  
 0.994
EFL36661.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
  
  0.980
EFL36667.1
L-rhamnose 1-epimerase.
 
  
 0.974
EFL36666.1
Rhamnose ABC transporter, rhamnose-binding protein.
 
     0.870
EFL32155.1
Xylulokinase.
    
 0.845
EFL36665.1
ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
     0.779
EFL36664.1
ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
     0.772
EFL36669.1
LacI family transcriptional regulator.
 
     0.729
EFL36668.1
Conserved hypothetical protein.
       0.653
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
  
  
 0.637
Your Current Organism:
Streptomyces viridochromogenes
NCBI taxonomy Id: 591159
Other names: S. viridochromogenes DSM 40736, Streptomyces viridochromogenes DSM 40736, Streptomyces viridochromogenes str. DSM 40736, Streptomyces viridochromogenes strain DSM 40736
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