STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL37097.1Sugar phosphate isomerase/epimerase. (387 aa)    
Predicted Functional Partners:
EFL37098.1
Secreted glycosyl hydrolase.
 
   
 0.861
EFL36048.1
Sugar phosphate isomerase/epimerase; Overlaps another CDS with the same product name.
 
     0.796
EFL36043.1
Glycosyl hydrolase.
 
   
 0.785
EFL36049.1
Hydrolase.
 
  
 0.776
EFL30332.1
Secreted glycosyl hydrolase.
 
   
 0.774
EFL30336.1
Secreted glycosyl hydrolase.
 
   
 0.773
EFL36051.1
Type I phosphodiesterase/nucleotide pyrophosphatase.
 
     0.766
EFL36191.1
Transcriptional regulator.
 
   
 0.758
EFL36050.1
Xylose isomerase domain-containing protein TIM barrel.
 
     0.742
EFL36047.1
Sugar phosphate isomerase/epimerase; Overlaps another CDS with the same product name.
 
     0.733
Your Current Organism:
Streptomyces viridochromogenes
NCBI taxonomy Id: 591159
Other names: S. viridochromogenes DSM 40736, Streptomyces viridochromogenes DSM 40736, Streptomyces viridochromogenes str. DSM 40736, Streptomyces viridochromogenes strain DSM 40736
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.