STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfla_0427PFAM: UspA domain-containing protein; KEGG: sgr:SGR_716 hypothetical protein. (177 aa)    
Predicted Functional Partners:
Sfla_0426
PFAM: polysaccharide deacetylase; KEGG: sgr:SGR_715 putative oligosaccharide deacetylase.
       0.764
Sfla_0643
PFAM: purine or other phosphorylase family 1; KEGG: sgr:SGR_961 hypothetical protein.
  
     0.615
Sfla_0411
PFAM: protein of unknown function DUF1458; KEGG: scb:SCAB_11251 hypothetical protein.
       0.515
Sfla_0738
PFAM: Protein of unknown function DUF2510; Scramblase family protein; KEGG: sma:SAV_1714 hypothetical protein.
  
     0.479
Sfla_1602
GAF sensor hybrid histidine kinase; KEGG: sgr:SGR_1773 putative two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein; response regulator receiver.
  
  
 0.412
Sfla_4862
KEGG: sgr:SGR_5550 hypothetical protein.
  
 
   0.408
Your Current Organism:
Streptomyces pratensis
NCBI taxonomy Id: 591167
Other names: S. pratensis ATCC 33331, Streptomyces flavogriseus ATCC 33331, Streptomyces pratensis ATCC 33331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.