STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfla_3711PFAM: protein of unknown function DUF1772; KEGG: scb:SCAB_79061 hypothetical protein. (148 aa)    
Predicted Functional Partners:
Sfla_3712
PFAM: regulatory protein TetR; KEGG: sma:SAV_205 TetR family transcriptional regulator.
 
     0.931
Sfla_5465
KEGG: sgr:SGR_6124 hypothetical protein.
  
     0.604
Sfla_5461
KEGG: sma:SAV_6936 hypothetical protein.
  
     0.473
Sfla_2735
KEGG: sgr:SGR_3168 hypothetical protein.
  
     0.410
Sfla_5463
KEGG: sgr:SGR_6122 hypothetical protein.
  
     0.410
Your Current Organism:
Streptomyces pratensis
NCBI taxonomy Id: 591167
Other names: S. pratensis ATCC 33331, Streptomyces flavogriseus ATCC 33331, Streptomyces pratensis ATCC 33331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.