STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfla_4990PFAM: fatty acid hydroxylase; KEGG: sgr:SGR_5668 hypothetical protein. (298 aa)    
Predicted Functional Partners:
Sfla_4991
PFAM: YhhN family protein; KEGG: sgr:SGR_5669 hypothetical protein.
 
     0.891
Sfla_0143
PFAM: fatty acid hydroxylase; KEGG: sgr:SGR_815 hypothetical protein.
  
     0.759
Sfla_4992
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: sgr:SGR_5670 putative zinc-containing alcohol dehydrogenase.
       0.732
Sfla_0644
TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; KEGG: sgr:SGR_962 putative squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase.
   
 
 0.680
Sfla_4499
PFAM: Prenyltransferase/squalene oxidase; KEGG: sgr:SGR_5175 hypothetical protein.
   
 
 0.680
Sfla_0354
KEGG: sco:SCO0187 phytoene synthase; PFAM: Squalene/phytoene synthase.
  
 
 0.593
Sfla_0647
TIGRFAM: squalene synthase HpnD; KEGG: sgr:SGR_965 putative squalene/phytoene synthase; PFAM: Squalene/phytoene synthase.
  
 
 0.593
Sfla_0648
Squalene synthase HpnC; KEGG: sgr:SGR_966 putative squalene/phytoene synthase; TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase.
  
 
 0.593
Sfla_4989
PFAM: protein of unknown function DUF125 transmembrane; KEGG: sma:SAV_6445 hypothetical protein.
       0.580
Sfla_0538
KEGG: sgr:SGR_3156 hypothetical protein; PFAM: diacylglycerol kinase catalytic region; phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; diacylglycerol kinase catalytic region.
   
 
 0.566
Your Current Organism:
Streptomyces pratensis
NCBI taxonomy Id: 591167
Other names: S. pratensis ATCC 33331, Streptomyces flavogriseus ATCC 33331, Streptomyces pratensis ATCC 33331
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