STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD68405.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (337 aa)    
Predicted Functional Partners:
SDD68347.1
TRAP transporter, DctM subunit.
 
    0.867
SDD68289.1
CubicO group peptidase, beta-lactamase class C family.
       0.773
SDD35993.1
TRAP transporter, DctM subunit.
  
    0.665
SDD49150.1
TRAP transporter, DctM subunit.
  
    0.630
SDD34053.1
TRAP transporter, DctM subunit.
  
    0.623
SDE03142.1
TRAP transporter, DctM subunit.
  
    0.597
SDD49084.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
     0.593
SDD68461.1
AraC-type DNA-binding protein.
       0.522
SDD70930.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.493
SDD34093.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
    0.471
Your Current Organism:
Paracoccus isoporae
NCBI taxonomy Id: 591205
Other names: BCRC 17967, DSM 22220, LMG 25205, LMG:25205, P. isoporae, Paracoccus isoporae Chen et al. 2011, Paracoccus sp. sw-3, strain SW-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.