node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplD | rplP | SAMN05421538_1026 | SAMN05421538_10212 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
rplD | rplR | SAMN05421538_1026 | SAMN05421538_10224 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
rplD | rplV | SAMN05421538_1026 | SAMN05421538_10210 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
rplD | rplX | SAMN05421538_1026 | SAMN05421538_10219 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Large subunit ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
rplD | rpmC | SAMN05421538_1026 | SAMN05421538_10216 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Large subunit ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.999 |
rplD | rpsB | SAMN05421538_1026 | SAMN05421538_102100 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rplD | rpsC | SAMN05421538_1026 | SAMN05421538_10211 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rplD | rpsH | SAMN05421538_1026 | SAMN05421538_10222 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Small subunit ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
rplD | rpsN | SAMN05421538_1026 | SAMN05421538_10221 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.999 |
rplD | rpsQ | SAMN05421538_1026 | SAMN05421538_10217 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |
rplP | rplD | SAMN05421538_10212 | SAMN05421538_1026 | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
rplP | rplR | SAMN05421538_10212 | SAMN05421538_10224 | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
rplP | rplV | SAMN05421538_10212 | SAMN05421538_10210 | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
rplP | rplX | SAMN05421538_10212 | SAMN05421538_10219 | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | Large subunit ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.998 |
rplP | rpmC | SAMN05421538_10212 | SAMN05421538_10216 | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | Large subunit ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.998 |
rplP | rpsB | SAMN05421538_10212 | SAMN05421538_102100 | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.998 |
rplP | rpsC | SAMN05421538_10212 | SAMN05421538_10211 | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rplP | rpsH | SAMN05421538_10212 | SAMN05421538_10222 | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | Small subunit ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
rplP | rpsN | SAMN05421538_10212 | SAMN05421538_10221 | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.997 |
rplP | rpsQ | SAMN05421538_10212 | SAMN05421538_10217 | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |