STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD99378.1DNA polymerase. (473 aa)    
Predicted Functional Partners:
SDD99414.1
Putative DNA modification/repair radical SAM protein.
 
     0.967
SDE38293.1
DNA polymerase.
  
  
 
0.860
SDD99496.1
Putative ABC transport system permease protein.
       0.577
SDD99457.1
Predicted secreted hydrolase.
       0.574
SDD99549.1
Putative ABC transport system ATP-binding protein.
       0.574
SDD99593.1
2-deoxy-D-gluconate 3-dehydrogenase.
       0.574
SDD99651.1
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase.
 
     0.528
SDD99307.1
Uncharacterized domain 1-containing protein.
       0.486
SDE39423.1
tRNA threonylcarbamoyl adenosine modification protein YeaZ.
  
    0.435
Your Current Organism:
Paracoccus isoporae
NCBI taxonomy Id: 591205
Other names: BCRC 17967, DSM 22220, LMG 25205, LMG:25205, P. isoporae, Paracoccus isoporae Chen et al. 2011, Paracoccus sp. sw-3, strain SW-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.