Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDD40769.1 | SDD70499.1 | SAMN05421538_101550 | SAMN05421538_102247 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Exodeoxyribonuclease-3. | 0.902 |
SDD40769.1 | SDD94970.1 | SAMN05421538_101550 | SAMN05421538_10396 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Exodeoxyribonuclease-3. | 0.902 |
SDD40769.1 | mutM | SAMN05421538_101550 | SAMN05421538_10327 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.540 |
SDD40769.1 | nth | SAMN05421538_101550 | SAMN05421538_10423 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Endonuclease-3; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.694 |
SDD40769.1 | polA | SAMN05421538_101550 | SAMN05421538_10589 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.525 |
SDD70499.1 | SDD40769.1 | SAMN05421538_102247 | SAMN05421538_101550 | Exodeoxyribonuclease-3. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.902 |
SDD70499.1 | SDD94970.1 | SAMN05421538_102247 | SAMN05421538_10396 | Exodeoxyribonuclease-3. | Exodeoxyribonuclease-3. | 0.935 |
SDD70499.1 | mutM | SAMN05421538_102247 | SAMN05421538_10327 | Exodeoxyribonuclease-3. | formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.497 |
SDD70499.1 | nth | SAMN05421538_102247 | SAMN05421538_10423 | Exodeoxyribonuclease-3. | Endonuclease-3; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.924 |
SDD70499.1 | polA | SAMN05421538_102247 | SAMN05421538_10589 | Exodeoxyribonuclease-3. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.898 |
SDD70499.1 | ung | SAMN05421538_102247 | SAMN05421538_102480 | Exodeoxyribonuclease-3. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.818 |
SDD94970.1 | SDD40769.1 | SAMN05421538_10396 | SAMN05421538_101550 | Exodeoxyribonuclease-3. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.902 |
SDD94970.1 | SDD70499.1 | SAMN05421538_10396 | SAMN05421538_102247 | Exodeoxyribonuclease-3. | Exodeoxyribonuclease-3. | 0.935 |
SDD94970.1 | mutM | SAMN05421538_10396 | SAMN05421538_10327 | Exodeoxyribonuclease-3. | formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.497 |
SDD94970.1 | nth | SAMN05421538_10396 | SAMN05421538_10423 | Exodeoxyribonuclease-3. | Endonuclease-3; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.924 |
SDD94970.1 | polA | SAMN05421538_10396 | SAMN05421538_10589 | Exodeoxyribonuclease-3. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.898 |
SDD94970.1 | ung | SAMN05421538_10396 | SAMN05421538_102480 | Exodeoxyribonuclease-3. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.818 |
SDE09539.1 | SDE09664.1 | SAMN05421538_10422 | SAMN05421538_10424 | Sugar or nucleoside kinase, ribokinase family. | Outer membrane protein OmpA. | 0.519 |
SDE09539.1 | nth | SAMN05421538_10422 | SAMN05421538_10423 | Sugar or nucleoside kinase, ribokinase family. | Endonuclease-3; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.866 |
SDE09664.1 | SDE09539.1 | SAMN05421538_10424 | SAMN05421538_10422 | Outer membrane protein OmpA. | Sugar or nucleoside kinase, ribokinase family. | 0.519 |
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