STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE10715.1Transglycosylase SLT domain-containing protein. (176 aa)    
Predicted Functional Partners:
SDE10674.1
Dihydrolipoamide dehydrogenase.
       0.773
SDE10752.1
Hypothetical protein.
       0.773
SDE10794.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
       0.570
SDE57822.1
Phosphatidylcholine synthase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.472
SDE10636.1
Uncharacterized conserved protein, MAPEG superfamily.
       0.465
SDE10833.1
Predicted arabinose efflux permease, MFS family.
       0.462
SDD97852.1
Glycosyl transferase family 2.
  
    0.449
SDD28503.1
Flagellar motor switch protein FliM.
 
    0.445
SDE10562.1
Hypothetical protein.
       0.423
SDE10604.1
Uncharacterized conserved protein, MAPEG superfamily.
       0.423
Your Current Organism:
Paracoccus isoporae
NCBI taxonomy Id: 591205
Other names: BCRC 17967, DSM 22220, LMG 25205, LMG:25205, P. isoporae, Paracoccus isoporae Chen et al. 2011, Paracoccus sp. sw-3, strain SW-3
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