Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDD37665.1 | SDE26408.1 | SAMN05421538_101489 | SAMN05421538_10596 | Glutamate synthase (NADPH/NADH) large chain. | GTP-binding protein. | 0.668 |
SDD37665.1 | fusA | SAMN05421538_101489 | SAMN05421538_1182 | Glutamate synthase (NADPH/NADH) large chain. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.808 |
SDD37665.1 | guaA | SAMN05421538_101489 | SAMN05421538_10483 | Glutamate synthase (NADPH/NADH) large chain. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.930 |
SDD37665.1 | rpoB | SAMN05421538_101489 | SAMN05421538_10816 | Glutamate synthase (NADPH/NADH) large chain. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.580 |
SDD37665.1 | tsf | SAMN05421538_101489 | SAMN05421538_102101 | Glutamate synthase (NADPH/NADH) large chain. | Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.540 |
SDE26408.1 | SDD37665.1 | SAMN05421538_10596 | SAMN05421538_101489 | GTP-binding protein. | Glutamate synthase (NADPH/NADH) large chain. | 0.668 |
SDE26408.1 | der | SAMN05421538_10596 | SAMN05421538_106204 | GTP-binding protein. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.747 |
SDE26408.1 | fusA | SAMN05421538_10596 | SAMN05421538_1182 | GTP-binding protein. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.652 |
SDE26408.1 | guaA | SAMN05421538_10596 | SAMN05421538_10483 | GTP-binding protein. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.806 |
SDE26408.1 | rplA | SAMN05421538_10596 | SAMN05421538_10811 | GTP-binding protein. | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.795 |
SDE26408.1 | rplD | SAMN05421538_10596 | SAMN05421538_1026 | GTP-binding protein. | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.656 |
SDE26408.1 | rpoB | SAMN05421538_10596 | SAMN05421538_10816 | GTP-binding protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.673 |
SDE26408.1 | rpsI | SAMN05421538_10596 | SAMN05421538_1133 | GTP-binding protein. | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.644 |
SDE26408.1 | trmD | SAMN05421538_10596 | SAMN05421538_105161 | GTP-binding protein. | tRNA (guanine37-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.662 |
SDE26408.1 | tsf | SAMN05421538_10596 | SAMN05421538_102101 | GTP-binding protein. | Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.731 |
der | SDE26408.1 | SAMN05421538_106204 | SAMN05421538_10596 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | GTP-binding protein. | 0.747 |
der | guaA | SAMN05421538_106204 | SAMN05421538_10483 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.583 |
der | rplA | SAMN05421538_106204 | SAMN05421538_10811 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.688 |
der | tsf | SAMN05421538_106204 | SAMN05421538_102101 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.428 |
fusA | SDD37665.1 | SAMN05421538_1182 | SAMN05421538_101489 | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | Glutamate synthase (NADPH/NADH) large chain. | 0.808 |
page 1 of 5