STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE41787.1Uncharacterized conserved protein, UPF0335 family. (83 aa)    
Predicted Functional Partners:
SDE41816.1
Hypothetical protein.
 
     0.782
SDE17823.1
Hypothetical protein.
  
   
 0.777
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.749
SDD29054.1
DNA polymerase III, chi subunit.
  
     0.715
SDE59054.1
Hypothetical protein.
  
   
 0.697
SDE14367.1
Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex.
  
   
 0.657
SDD25387.1
Glutathione S-transferase.
  
     0.642
SDE87134.1
Hypothetical protein.
  
     0.630
SDD45682.1
DNA helicase/exodeoxyribonuclease V, subunit A; Belongs to the helicase family. UvrD subfamily.
  
     0.616
SDD44995.1
Tim44-like domain-containing protein.
  
     0.614
Your Current Organism:
Paracoccus isoporae
NCBI taxonomy Id: 591205
Other names: BCRC 17967, DSM 22220, LMG 25205, LMG:25205, P. isoporae, Paracoccus isoporae Chen et al. 2011, Paracoccus sp. sw-3, strain SW-3
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