STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE47809.1Type VI secretion system secreted protein Hcp. (158 aa)    
Predicted Functional Partners:
SDE47897.1
Type VI secretion system protein ImpB.
 
 0.998
SDE47855.1
Type VI secretion system protein ImpC.
 
 0.997
SDE47690.1
Type VI secretion system protein ImpH.
 
 
 0.991
SDE47948.1
Type VI secretion system protein ImpA.
 
 
 0.982
SDE47529.1
Type VI secretion system protein ImpK.
 
  
 0.973
SDE47563.1
Type VI secretion system protein ImpJ.
 
 
 0.969
SDE47391.1
Type VI secretion system secreted protein VgrG.
 
  
 0.967
SDE47724.1
Type VI secretion system protein ImpG.
 
  
 0.964
SDE47758.1
Type VI secretion system protein ImpF.
 
  
 0.956
SDE47489.1
Type VI secretion system protein ImpL.
 
 
 0.955
Your Current Organism:
Paracoccus isoporae
NCBI taxonomy Id: 591205
Other names: BCRC 17967, DSM 22220, LMG 25205, LMG:25205, P. isoporae, Paracoccus isoporae Chen et al. 2011, Paracoccus sp. sw-3, strain SW-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.