Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDD37665.1 | SDE64475.1 | SAMN05421538_101489 | SAMN05421538_10915 | Glutamate synthase (NADPH/NADH) large chain. | Protein of unknown function. | 0.611 |
SDD37665.1 | SDE64516.1 | SAMN05421538_101489 | SAMN05421538_10916 | Glutamate synthase (NADPH/NADH) large chain. | Amidohydrolase. | 0.745 |
SDD37665.1 | dapF | SAMN05421538_101489 | SAMN05421538_108115 | Glutamate synthase (NADPH/NADH) large chain. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.979 |
SDE64379.1 | SDE64433.1 | SAMN05421538_10913 | SAMN05421538_10914 | Chaperone modulatory protein CbpM. | DnaJ domain-containing protein. | 0.980 |
SDE64379.1 | SDE64475.1 | SAMN05421538_10913 | SAMN05421538_10915 | Chaperone modulatory protein CbpM. | Protein of unknown function. | 0.683 |
SDE64379.1 | SDE64516.1 | SAMN05421538_10913 | SAMN05421538_10916 | Chaperone modulatory protein CbpM. | Amidohydrolase. | 0.472 |
SDE64433.1 | SDE64379.1 | SAMN05421538_10914 | SAMN05421538_10913 | DnaJ domain-containing protein. | Chaperone modulatory protein CbpM. | 0.980 |
SDE64433.1 | SDE64475.1 | SAMN05421538_10914 | SAMN05421538_10915 | DnaJ domain-containing protein. | Protein of unknown function. | 0.639 |
SDE64433.1 | SDE64516.1 | SAMN05421538_10914 | SAMN05421538_10916 | DnaJ domain-containing protein. | Amidohydrolase. | 0.472 |
SDE64475.1 | SDD37665.1 | SAMN05421538_10915 | SAMN05421538_101489 | Protein of unknown function. | Glutamate synthase (NADPH/NADH) large chain. | 0.611 |
SDE64475.1 | SDE64379.1 | SAMN05421538_10915 | SAMN05421538_10913 | Protein of unknown function. | Chaperone modulatory protein CbpM. | 0.683 |
SDE64475.1 | SDE64433.1 | SAMN05421538_10915 | SAMN05421538_10914 | Protein of unknown function. | DnaJ domain-containing protein. | 0.639 |
SDE64475.1 | SDE64516.1 | SAMN05421538_10915 | SAMN05421538_10916 | Protein of unknown function. | Amidohydrolase. | 0.562 |
SDE64516.1 | SDD37665.1 | SAMN05421538_10916 | SAMN05421538_101489 | Amidohydrolase. | Glutamate synthase (NADPH/NADH) large chain. | 0.745 |
SDE64516.1 | SDE64379.1 | SAMN05421538_10916 | SAMN05421538_10913 | Amidohydrolase. | Chaperone modulatory protein CbpM. | 0.472 |
SDE64516.1 | SDE64433.1 | SAMN05421538_10916 | SAMN05421538_10914 | Amidohydrolase. | DnaJ domain-containing protein. | 0.472 |
SDE64516.1 | SDE64475.1 | SAMN05421538_10916 | SAMN05421538_10915 | Amidohydrolase. | Protein of unknown function. | 0.562 |
SDE64516.1 | dapD | SAMN05421538_10916 | SAMN05421538_101213 | Amidohydrolase. | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family. | 0.509 |
SDE64516.1 | dapF | SAMN05421538_10916 | SAMN05421538_108115 | Amidohydrolase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.409 |
dapD | SDE64516.1 | SAMN05421538_101213 | SAMN05421538_10916 | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family. | Amidohydrolase. | 0.509 |
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