STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE72196.1TRAP transporter, DctM subunit. (445 aa)    
Predicted Functional Partners:
SDE72161.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.995
SDE72226.1
Tat (twin-arginine translocation) pathway signal sequence.
 
 
  0.989
SDE72254.1
Glutamine synthetase.
 
     0.783
SDE72323.1
Hypothetical protein.
 
     0.761
SDE72284.1
Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family.
 
     0.759
SDE72124.1
DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor.
 
     0.747
SDE72092.1
Glycerol-3-phosphate dehydrogenase.
 
     0.579
SDE72062.1
Thioredoxin reductase.
 
     0.570
SDE72026.1
Glycerol kinase; Belongs to the FGGY kinase family.
       0.482
SDD36922.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
    0.475
Your Current Organism:
Paracoccus isoporae
NCBI taxonomy Id: 591205
Other names: BCRC 17967, DSM 22220, LMG 25205, LMG:25205, P. isoporae, Paracoccus isoporae Chen et al. 2011, Paracoccus sp. sw-3, strain SW-3
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