Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDE75770.1 | SDE75814.1 | SAMN05421538_1111 | SAMN05421538_1112 | Beta protein. | HTH-type transcriptional regulator / antitoxin HigA. | 0.808 |
SDE75770.1 | SDE75854.1 | SAMN05421538_1111 | SAMN05421538_1113 | Beta protein. | Type IV secretion system protein VirB6. | 0.469 |
SDE75770.1 | SDE75890.1 | SAMN05421538_1111 | SAMN05421538_1114 | Beta protein. | Hypothetical protein. | 0.460 |
SDE75770.1 | SDE75936.1 | SAMN05421538_1111 | SAMN05421538_1115 | Beta protein. | Protein of unknown function. | 0.460 |
SDE75770.1 | SDE75970.1 | SAMN05421538_1111 | SAMN05421538_1116 | Beta protein. | Type IV secretion system protein VirB11. | 0.460 |
SDE75770.1 | SDE76003.1 | SAMN05421538_1111 | SAMN05421538_1117 | Beta protein. | Type IV secretion system protein VirB10. | 0.460 |
SDE75770.1 | SDE76045.1 | SAMN05421538_1111 | SAMN05421538_1118 | Beta protein. | Type IV secretion system protein VirB9. | 0.460 |
SDE75770.1 | SDE76232.1 | SAMN05421538_1111 | SAMN05421538_11113 | Beta protein. | Type IV secretion system protein VirB4. | 0.439 |
SDE75814.1 | SDE75770.1 | SAMN05421538_1112 | SAMN05421538_1111 | HTH-type transcriptional regulator / antitoxin HigA. | Beta protein. | 0.808 |
SDE75814.1 | SDE75854.1 | SAMN05421538_1112 | SAMN05421538_1113 | HTH-type transcriptional regulator / antitoxin HigA. | Type IV secretion system protein VirB6. | 0.469 |
SDE75814.1 | SDE75890.1 | SAMN05421538_1112 | SAMN05421538_1114 | HTH-type transcriptional regulator / antitoxin HigA. | Hypothetical protein. | 0.460 |
SDE75814.1 | SDE75936.1 | SAMN05421538_1112 | SAMN05421538_1115 | HTH-type transcriptional regulator / antitoxin HigA. | Protein of unknown function. | 0.460 |
SDE75814.1 | SDE75970.1 | SAMN05421538_1112 | SAMN05421538_1116 | HTH-type transcriptional regulator / antitoxin HigA. | Type IV secretion system protein VirB11. | 0.460 |
SDE75814.1 | SDE76003.1 | SAMN05421538_1112 | SAMN05421538_1117 | HTH-type transcriptional regulator / antitoxin HigA. | Type IV secretion system protein VirB10. | 0.460 |
SDE75814.1 | SDE76045.1 | SAMN05421538_1112 | SAMN05421538_1118 | HTH-type transcriptional regulator / antitoxin HigA. | Type IV secretion system protein VirB9. | 0.460 |
SDE75814.1 | SDE76232.1 | SAMN05421538_1112 | SAMN05421538_11113 | HTH-type transcriptional regulator / antitoxin HigA. | Type IV secretion system protein VirB4. | 0.524 |
SDE75814.1 | lexA | SAMN05421538_1112 | SAMN05421538_102486 | HTH-type transcriptional regulator / antitoxin HigA. | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.496 |
SDE75814.1 | recA | SAMN05421538_1112 | SAMN05421538_104121 | HTH-type transcriptional regulator / antitoxin HigA. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.494 |
SDE75854.1 | SDE75770.1 | SAMN05421538_1113 | SAMN05421538_1111 | Type IV secretion system protein VirB6. | Beta protein. | 0.469 |
SDE75854.1 | SDE75814.1 | SAMN05421538_1113 | SAMN05421538_1112 | Type IV secretion system protein VirB6. | HTH-type transcriptional regulator / antitoxin HigA. | 0.469 |
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