STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE82229.1Type IV secretion system protein VirB3. (92 aa)    
Predicted Functional Partners:
SDE82261.1
Type IV secretion system protein VirB4.
  
 
 0.961
SDE82471.1
Type IV secretion system protein VirB8.
  
 
 0.895
SDE82432.1
TrbL/VirB6 plasmid conjugal transfer protein.
  
  
 0.882
SDE82501.1
Type IV secretion system protein VirB9.
  
  
 0.844
SDE82533.1
Type IV secretion system protein VirB10.
  
  
 0.841
SDE76232.1
Type IV secretion system protein VirB4.
  
 
 0.834
SDE82197.1
TrbC/VIRB2 family protein.
     
 0.802
SDE82296.1
Hypothetical protein.
       0.773
SDE76088.1
Type IV secretion system protein VirB8.
  
 
 0.772
SDE82152.1
Transglycosylase SLT domain-containing protein.
       0.761
Your Current Organism:
Paracoccus isoporae
NCBI taxonomy Id: 591205
Other names: BCRC 17967, DSM 22220, LMG 25205, LMG:25205, P. isoporae, Paracoccus isoporae Chen et al. 2011, Paracoccus sp. sw-3, strain SW-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.