STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE92431.1ABC-2 type transport system ATP-binding protein. (239 aa)    
Predicted Functional Partners:
SDE92388.1
ABC-2 type transport system permease protein.
 
 
 0.969
SDE92502.1
PQQ-dependent catabolism-associated beta-propeller protein.
 
    0.952
SDE92542.1
ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system.
 
 
  0.952
SDE92467.1
Hypothetical protein.
 
    0.938
SDE92610.1
ABC-type amino acid transport substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
  
  0.858
SDE92576.1
Cytochrome c-550 PedF.
 
    0.839
SDE92278.1
NitT/TauT family transport system substrate-binding protein.
  
 
  0.797
SDE92314.1
NitT/TauT family transport system permease protein.
  
  
  0.768
SDE92232.1
Alcohol dehydrogenase (cytochrome c).
  
    0.754
SDE92681.1
Regulator of nitric oxide reductase transcription.
 
  
 0.750
Your Current Organism:
Paracoccus isoporae
NCBI taxonomy Id: 591205
Other names: BCRC 17967, DSM 22220, LMG 25205, LMG:25205, P. isoporae, Paracoccus isoporae Chen et al. 2011, Paracoccus sp. sw-3, strain SW-3
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