STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF40Bpre-mRNA processing factor 40 homolog B. (893 aa)    
Predicted Functional Partners:
PRPF39
pre-mRNA processing factor 39.
    
 0.962
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.962
LUC7L
LUC7 like.
   
 0.958
LUC7L2
LUC7 like 2, pre-mRNA splicing factor.
   
 0.958
SF3B3
Splicing factor 3b subunit 3.
    
 0.939
ENSPTEP00000028652
annotation not available
    
 0.939
ENSPTEP00000008905
annotation not available
    
 0.938
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
    
 0.938
ENSPTEP00000019819
annotation not available
   
 0.936
DDX46
DEAD-box helicase 46.
   
 0.936
Your Current Organism:
Piliocolobus tephrosceles
NCBI taxonomy Id: 591936
Other names: P. tephrosceles, Procolobus badius tephrosceles, Procolobus rufomitratus tephrosceles, Ugandan red Colobus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.