PPP1R16B protein (Piliocolobus tephrosceles)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PPP1R16B

Protein phosphatase 1 regulatory subunit 16B. (567 aa)

Predicted Functional Partners:

ENSPTEP00000001602

0.891

ENSPTEP00000007119

0.891

ENSPTEP00000039346

0.781

LOC111532527

0.745

ENSPTEP00000006191

0.745

PPP1CC

0.745

LOC111532210

0.706

PPP1CA

0.706

LEO1

0.697

PPP1R14A

0.687

Your Current Organism:

Piliocolobus tephrosceles

NCBI taxonomy Id: 591936
Other names: P. tephrosceles, Procolobus badius tephrosceles, Procolobus rufomitratus tephrosceles, Ugandan red Colobus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPTEP00000001602	ENSPTEP00000006191	ENSPTEP00000001602	ENSPTEP00000006191	annotation not available	annotation not available	0.930
ENSPTEP00000001602	ENSPTEP00000039346	ENSPTEP00000001602	ENSPTEP00000039346	annotation not available	annotation not available	0.968
ENSPTEP00000001602	LOC111532210	ENSPTEP00000001602	ENSPTEP00000006231	annotation not available	Serine/threonine-protein phosphatase PP1-beta-like.	0.857
ENSPTEP00000001602	LOC111532527	ENSPTEP00000001602	ENSPTEP00000001592	annotation not available	Serine/threonine-protein phosphatase BSL2 homolog.	0.928
ENSPTEP00000001602	PPP1CA	ENSPTEP00000001602	ENSPTEP00000033521	annotation not available	Protein phosphatase 1 catalytic subunit alpha.	0.969
ENSPTEP00000001602	PPP1CC	ENSPTEP00000001602	ENSPTEP00000013828	annotation not available	Protein phosphatase 1 catalytic subunit gamma.	0.929
ENSPTEP00000001602	PPP1R14A	ENSPTEP00000001602	ENSPTEP00000004267	annotation not available	Protein phosphatase 1 regulatory inhibitor subunit 14A.	0.820
ENSPTEP00000001602	PPP1R16B	ENSPTEP00000001602	ENSPTEP00000017242	annotation not available	Protein phosphatase 1 regulatory subunit 16B.	0.891
ENSPTEP00000006191	ENSPTEP00000001602	ENSPTEP00000006191	ENSPTEP00000001602	annotation not available	annotation not available	0.930
ENSPTEP00000006191	ENSPTEP00000007119	ENSPTEP00000006191	ENSPTEP00000007119	annotation not available	annotation not available	0.930
ENSPTEP00000006191	ENSPTEP00000039346	ENSPTEP00000006191	ENSPTEP00000039346	annotation not available	annotation not available	0.969
ENSPTEP00000006191	PPP1CA	ENSPTEP00000006191	ENSPTEP00000033521	annotation not available	Protein phosphatase 1 catalytic subunit alpha.	0.961
ENSPTEP00000006191	PPP1R14A	ENSPTEP00000006191	ENSPTEP00000004267	annotation not available	Protein phosphatase 1 regulatory inhibitor subunit 14A.	0.716
ENSPTEP00000006191	PPP1R16B	ENSPTEP00000006191	ENSPTEP00000017242	annotation not available	Protein phosphatase 1 regulatory subunit 16B.	0.745
ENSPTEP00000007119	ENSPTEP00000006191	ENSPTEP00000007119	ENSPTEP00000006191	annotation not available	annotation not available	0.930
ENSPTEP00000007119	ENSPTEP00000039346	ENSPTEP00000007119	ENSPTEP00000039346	annotation not available	annotation not available	0.968
ENSPTEP00000007119	LOC111532210	ENSPTEP00000007119	ENSPTEP00000006231	annotation not available	Serine/threonine-protein phosphatase PP1-beta-like.	0.857
ENSPTEP00000007119	LOC111532527	ENSPTEP00000007119	ENSPTEP00000001592	annotation not available	Serine/threonine-protein phosphatase BSL2 homolog.	0.928
ENSPTEP00000007119	PPP1CA	ENSPTEP00000007119	ENSPTEP00000033521	annotation not available	Protein phosphatase 1 catalytic subunit alpha.	0.969
ENSPTEP00000007119	PPP1CC	ENSPTEP00000007119	ENSPTEP00000013828	annotation not available	Protein phosphatase 1 catalytic subunit gamma.	0.929