STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsFRibosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (128 aa)    
Predicted Functional Partners:
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
 0.999
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.999
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
 
 0.999
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
 
 0.999
rpsB
Ribosomal protein S2; Annotation was generated automatically without manual curation; Belongs to the universal ribosomal protein uS2 family.
   
 0.999
rpmB
Conserved domain protein; Annotation was generated automatically without manual curation; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.999
rpmF
Ribosomal protein L32; Annotation was generated automatically without manual curation; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.999
rplY
Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
 
 0.999
rpmI
Ribosomal protein L35; Annotation was generated automatically without manual curation; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.999
rplQ
Ribosomal protein L17; Annotation was generated automatically without manual curation.
  
 
 0.999
Your Current Organism:
Rickettsiella grylli
NCBI taxonomy Id: 59196
Other names: R. grylli
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.