STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP45886.1Hypothetical protein; Annotation was generated automatically without manual curation; identified by glimmer; putative; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (206 aa)    
Predicted Functional Partners:
EDP46221.1
Putative outer membrane protein; Annotation was generated automatically without manual curation; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
 
0.731
EDP46883.1
Putative OmpA/MotB domain protein; Annotation was generated automatically without manual curation.
  
  
0.574
EDP46986.1
Outer membrane protein; Annotation was generated automatically without manual curation.
    
   0.571
EDP45932.1
Putative outer membrane protein OmpA; Annotation was generated automatically without manual curation.
     
 
0.540
EDP46001.1
Hypothetical protein; Annotation was generated automatically without manual curation; identified by glimmer; putative; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
     
 
0.540
rpmF
Ribosomal protein L32; Annotation was generated automatically without manual curation; Belongs to the bacterial ribosomal protein bL32 family.
   
   0.497
EDP47042.1
Hypothetical protein; Annotation was generated automatically without manual curation; identified by glimmer; putative.
  
  
0.477
EDP46977.1
Protease do; Annotation was generated automatically without manual curation.
    
   0.465
rplY
Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
   
   0.448
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
   0.445
Your Current Organism:
Rickettsiella grylli
NCBI taxonomy Id: 59196
Other names: R. grylli
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.