STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacBD-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Annotation was generated automatically without manual curation. (497 aa)    
Predicted Functional Partners:
EDP46705.1
Annotation was generated automatically without manual curation; Belongs to the peptidase S11 family.
     
 0.905
EDP45705.1
Conserved hypothetical protein; Annotation was generated automatically without manual curation.
       0.773
rumA
23S rRNA (uracil-5-)-methyltransferase RumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
       0.773
EDP46311.1
Microcin C7 self-immunity protein; Annotation was generated automatically without manual curation.
 
  
 0.718
EDP47004.1
Beta-hexosaminidase (N-acetyl-beta-glucosaminidase)(Beta-N- acetylhexosaminidase); Annotation was generated automatically without manual curation.
  
  
 0.707
EDP46313.1
Ankyrin repeat domain protein; Annotation was generated automatically without manual curation.
  
 
   0.544
EDP46183.1
GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp synthetase I) ((P)ppGpp synthetase); In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
       0.535
EDP46233.1
Enhanced entry protein EnhA; Annotation was generated automatically without manual curation.
     
 0.502
EDP45669.1
Putative ankyrin repeat protein; Annotation was generated automatically without manual curation.
    
 
 0.478
EDP46875.1
Putative ankyrin repeat protein; Annotation was generated automatically without manual curation.
    
   0.477
Your Current Organism:
Rickettsiella grylli
NCBI taxonomy Id: 59196
Other names: R. grylli
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