STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hldEBifunctional protein HldE; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family. (480 aa)    
Predicted Functional Partners:
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
 0.995
EDP46132.1
D,D-heptose 1,7-bisphosphate phosphatase (D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase); Annotation was generated automatically without manual curation.
  
 0.982
rfaD
ADP-glyceromanno-heptose 6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
 
 
 0.967
rfaF
Lipopolysaccharide heptosyltransferase II; Annotation was generated automatically without manual curation.
  
 0.896
EDP46206.1
Sugar isomerase family protein; Annotation was generated automatically without manual curation.
    
 0.869
rfaC
Lipopolysaccharide heptosyltransferase I; Annotation was generated automatically without manual curation.
 
  
 0.804
EDP47020.1
Putative lipopolysaccharide heptosyltransferase III; Annotation was generated automatically without manual curation.
 
  
 0.804
kdsA
3-deoxy-8-phosphooctulonate synthase; Annotation was generated automatically without manual curation; Belongs to the KdsA family.
    
 0.732
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Annotation was generated automatically without manual curation; Belongs to the KdsB family.
    
 0.717
EDP46262.1
Annotation was generated automatically without manual curation.
    
  0.622
Your Current Organism:
Rickettsiella grylli
NCBI taxonomy Id: 59196
Other names: R. grylli
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