STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ESK66157.1Glycerophosphodiester phosphodiesterase family protein; KEGG: lla:L1007 3.3e-37 yagA; glycerophosphoryl diester phosphodiesterase K01126. (250 aa)    
Predicted Functional Partners:
ESK65359.1
Glycerophosphodiester phosphodiesterase family protein; KEGG: sas:SAS0204 4.6e-104 putative membrane protein K01126; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 
0.928
ESK66190.1
Hydrolase, alpha/beta domain protein; KEGG: cac:CAC2246 1.2e-30 lysophospholipase L2 PLDB, hydrolase of alpha/beta superfamily K01048; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.927
ESK65619.1
Glycerophosphodiester phosphodiesterase family protein; KEGG: sav:SAV0228 4.2e-101 glycerophosphoryl diester phosphodiesterase K01126; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 
0.927
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
      0.926
ESK64726.1
Hypothetical protein; KEGG: lma:LmjF36.5960 2.2e-17 glycerophosphoryl diester phosphodiesterase, putative K01126; Psort location: Cytoplasmic, score: 8.96.
  
  
  0.918
hflX
GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
  
    0.804
RecN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
     
 0.787
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
    0.776
ESK66159.1
KEGG: cff:CFF8240_1111 4.6e-24 rrmJ; ribosomal RNA large subunit methyltransferase J K00599.
       0.692
ESK66160.1
KEGG: bcl:ABC2463 2.1e-60 ispA; geranyltranstransferase K00795; Psort location: Cytoplasmic, score: 9.97; Belongs to the FPP/GGPP synthase family.
     
 0.688
Your Current Organism:
Abiotrophia defectiva
NCBI taxonomy Id: 592010
Other names: A. defectiva ATCC 49176, Abiotrophia defectiva ATCC 49176, Abiotrophia defectiva str. ATCC 49176, Abiotrophia defectiva strain ATCC 49176
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