STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ESK66201.1Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: bca:BCE_2529 1.4e-45 dacA; D-alanyl-D-alanine carboxypeptidase K01286; Psort location: CytoplasmicMembrane, score: 8.02; Belongs to the peptidase S11 family. (405 aa)    
Predicted Functional Partners:
ESK64819.1
Hypothetical protein; KEGG: lin:lin2897 5.0e-50 similar to D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) K07258; Psort location: CytoplasmicMembrane, score: 8.02.
  
  
 
0.929
ESK65191.1
Penicillin-binding protein, 1A family; KEGG: lin:lin2006 7.3e-149 pbpA; similar to penicillin-binding protein 2A K05366.
 
 
 0.923
ESK66111.1
Penicillin-binding protein, 1A family; KEGG: lwe:lwe2246 1.4e-139 penicillin-binding protein K05364.
 
 
 0.922
ESK65356.1
KEGG: lpl:lp_1010 6.4e-34 dacB; serine-type D-Ala-D-Ala carboxypeptidase K07260; Psort location: Cytoplasmic, score: 9.26.
    
 0.912
ESK66509.1
Transglycosylase; KEGG: spk:MGAS9429_Spy0082 1.2e-126 pbp1b; multimodular transpeptidase-transglycosylase PBP 1B K05364.
  
 
 0.910
ESK66200.1
Hypothetical protein.
       0.523
PknB
KEGG: lmo:lmo1820 9.1e-138 similar to putative serine/threonine-specific protein kinase K08884; Psort location: CytoplasmicMembrane, score: 9.82.
  
  
 0.479
ESK65815.1
DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
 
    0.464
rlmH
rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
 
  
 0.407
ESK66566.1
Penicillin-binding protein, transpeptidase domain protein; KEGG: bcz:BCZK2246 1.9e-130 pbp2; penicillin-binding protein 2 K05364; Psort location: CytoplasmicMembrane, score: 8.02.
 
  
 0.405
Your Current Organism:
Abiotrophia defectiva
NCBI taxonomy Id: 592010
Other names: A. defectiva ATCC 49176, Abiotrophia defectiva ATCC 49176, Abiotrophia defectiva str. ATCC 49176, Abiotrophia defectiva strain ATCC 49176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.