STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT35635.1RNA polymerase sigma factor, FliA/WhiG family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (251 aa)    
Predicted Functional Partners:
KRT35861.1
Flagellar biosynthesis anti-sigma factor FlgM; KEGG: tro:trd_A0046 0.00053 histone demethylase jarid1c (jumonji/ARID domain-containing protein 1c) (protein smcx) (protein); Psort location: Cytoplasmic, score: 8.96.
  
 0.996
KRT35619.1
KEGG: bmd:BMD_4168 1.1e-42 fliN; flagellar motor switch protein FliN K02417; Psort location: CytoplasmicMembrane, score: 7.88.
 
  
 0.963
KRT35618.1
Flagellar motor switch protein FliM; KEGG: apb:SAR116_0825 3.5e-18 surface presentation of antigens (SpoA) protein K02416; Psort location: CytoplasmicMembrane, score: 7.88.
 
 
 0.954
KRT35615.1
Putative chemotaxis protein PomA; KEGG: apb:SAR116_0813 1.8e-44 MotA/TolQ/ExbB proton channel K02556; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.937
KRT35601.1
KEGG: apb:SAR116_0851 3.7e-12 flagellar basal-body rod protein FlgC K02388.
 
 
 0.931
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.929
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.929
KRT35604.1
KEGG: apb:SAR116_0831 7.0e-57 flagellar motor switch protein FliG K02410; Psort location: Cytoplasmic, score: 9.12.
 
  
 0.928
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.913
KRT35863.1
KEGG: apb:SAR116_0843 4.2e-22 FlgK flagellar hook-associated protein 1 K02396; Psort location: Extracellular, score: 9.71.
 
  
 0.913
Your Current Organism:
Acetomicrobium hydrogeniformans
NCBI taxonomy Id: 592015
Other names: A. hydrogeniformans ATCC BAA-1850, Acetomicrobium hydrogeniformans ATCC BAA-1850, Anaerobaculum hydrogeniforman DSM 22491, Anaerobaculum hydrogeniforman OS1, Anaerobaculum sp. OS1
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