STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT35690.1Histidine triad domain protein; KEGG: gga:395424 4.6e-21 HINT1, CHPKCI, HINTZ, PKCIZ; histidine triad nucleotide binding protein 1; Psort location: Cytoplasmic, score: 9.26. (113 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.853
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.845
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
  0.843
rpsU
Ribosomal protein S21; KEGG: seh:SeHA_C3463 1.3e-07 rpsU; 30S ribosomal protein S21 K02970; Belongs to the bacterial ribosomal protein bS21 family.
  
    0.815
KRT35689.1
DnaJ domain protein; KEGG: tgo:TGME49_113310 0.0039 DnaJ domain-containing protein; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.721
KRT35688.1
DnaK family protein; KEGG: lre:Lreu_0706 6.2e-38 dnaK; molecular chaperone DnaK K04043; Psort location: Cytoplasmic, score: 9.97; Belongs to the heat shock protein 70 family.
     
 0.717
KRT36203.1
Ribosomal RNA large subunit methyltransferase J; KEGG: rcm:A1E_02195 1.4e-44 tyrosyl-tRNA synthetase K06442; Psort location: Cytoplasmic, score: 8.96.
      0.705
KRT35686.1
tRNA methylthiotransferase YqeV; KEGG: cdf:CD2448 2.7e-71 putative radical SAM superfamily protein; K08070 2-alkenal reductase; Psort location: Cytoplasmic, score: 9.97.
 
   0.694
KRT34923.1
KEGG: tai:Taci_1436 0. pyruvate ferredoxin/flavodoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase; Psort location: Cytoplasmic, score: 8.96.
   
   0.643
KRT34816.1
Hydrolase, NUDIX family; KEGG: noc:Noc_1415 8.2e-31 NUDIX hydrolase K01518; Psort location: Cytoplasmic, score: 8.96.
  
 0.536
Your Current Organism:
Acetomicrobium hydrogeniformans
NCBI taxonomy Id: 592015
Other names: A. hydrogeniformans ATCC BAA-1850, Acetomicrobium hydrogeniformans ATCC BAA-1850, Anaerobaculum hydrogeniforman DSM 22491, Anaerobaculum hydrogeniforman OS1, Anaerobaculum sp. OS1
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