STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT34484.1KEGG: tpd:Teth39_1674 5.2e-93 4-hydroxythreonine-4-phosphate dehydrogenase K00097; Psort location: Cytoplasmic, score: 9.97; Belongs to the PdxA family. (330 aa)    
Predicted Functional Partners:
KRT34485.1
KEGG: pct:PC1_0750 3.3e-27 protein-N(pi)-phosphohistidine--sugar phosphotransferase; Psort location: Cytoplasmic, score: 8.96.
     0.993
KRT34486.1
Putative 2-keto-3-deoxygluconate transporter; KEGG: csa:Csal_1021 3.5e-05 araH; L-arabinose transporter permease protein K10538; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.901
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
  
 0.846
gyrB
DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
 
      0.840
KRT34493.1
Putative 2-keto-3-deoxygluconate transporter; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.629
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  
 0.549
KRT35367.1
KEGG: sti:Sthe_0488 2.5e-68 dihydrodipicolinate synthase; Psort location: Cytoplasmic, score: 9.97; Belongs to the DapA family.
 
  
 0.526
KRT35312.1
Ser/Thr phosphatase family protein; KEGG: pas:Pars_2072 7.6e-28 bis(5'nucleosyl)-tetraphosphatase, ApaH; K01090 protein phosphatase; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.518
KRT34487.1
D-galactarate dehydratase/altronate hydrolase; KEGG: toc:Toce_0651 2.5e-171 altronate dehydratase K01685; Psort location: Cytoplasmic, score: 8.96.
       0.499
KRT34488.1
SAF domain protein; KEGG: toc:Toce_0650 1.2e-27 SAF domain protein; K01685 altronate hydrolase; Psort location: Cytoplasmic, score: 8.96.
       0.499
Your Current Organism:
Acetomicrobium hydrogeniformans
NCBI taxonomy Id: 592015
Other names: A. hydrogeniformans ATCC BAA-1850, Acetomicrobium hydrogeniformans ATCC BAA-1850, Anaerobaculum hydrogeniforman DSM 22491, Anaerobaculum hydrogeniforman OS1, Anaerobaculum sp. OS1
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