STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT36417.1Putative YbaK/EbsC protein; KEGG: ddd:Dda3937_04156 7.6e-12 ybaK; bifunctional cys-tRNA Pro deacetylase/cys-tRNA Cys deacylase; Psort location: Cytoplasmic, score: 9.97. (162 aa)    
Predicted Functional Partners:
KRT35619.1
KEGG: bmd:BMD_4168 1.1e-42 fliN; flagellar motor switch protein FliN K02417; Psort location: CytoplasmicMembrane, score: 7.88.
    
   0.963
KRT36418.1
Transglycosylase SLT domain protein; KEGG: aco:Amico_0366 1.1e-101 lytic transglycosylase catalytic; K08309 soluble lytic murein transglycosylase; Psort location: Periplasmic, score: 9.44.
       0.795
fliE
Flagellar hook-basal body complex protein FliE.
    
   0.724
KRT35611.1
KEGG: apb:SAR116_0850 4.8e-08 flagellar hook capping protein K02389.
    
   0.724
KRT36274.1
CheR methyltransferase, SAM binding domain protein; KEGG: tai:Taci_0862 9.4e-78 MCP methyltransferase, CheR-type K00575; Psort location: Cytoplasmic, score: 9.97.
    
   0.724
KRT35632.1
CheC-like family protein; KEGG: lsp:Bsph_1576 9.4e-30 CheY-P phosphatase CheC K03410.
    
   0.515
proS
proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
     
 0.508
aspS
aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
    
 0.498
KRT36419.1
Iron dependent repressor, DNA binding domain protein; KEGG: apb:SAR116_1403 1.3e-09 conserved protein, winged helix domain protein K11924; Psort location: Cytoplasmic, score: 9.97.
       0.467
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
 0.464
Your Current Organism:
Acetomicrobium hydrogeniformans
NCBI taxonomy Id: 592015
Other names: A. hydrogeniformans ATCC BAA-1850, Acetomicrobium hydrogeniformans ATCC BAA-1850, Anaerobaculum hydrogeniforman DSM 22491, Anaerobaculum hydrogeniforman OS1, Anaerobaculum sp. OS1
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