STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT34558.1Peptidase, M50 family; KEGG: bmq:BMQ_5195 1.9e-38 peptidase M50 (zinc protease); Psort location: CytoplasmicMembrane, score: 10.00. (200 aa)    
Predicted Functional Partners:
KRT34559.1
CBS domain protein; KEGG: aco:Amico_1177 4.2e-272 CBS domain containing protein; K00970 poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.844
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.830
KRT34561.1
Putative ATP-dependent helicase PcrA; KEGG: aco:Amico_1179 3.0e-184 UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA; Psort location: Cytoplasmic, score: 9.97.
  
    0.824
KRT34562.1
KEGG: dsh:Dshi_2360 1.6e-11 ureG; urease accessory protein K03189; Psort location: Cytoplasmic, score: 9.97.
       0.817
hypA
Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
       0.817
surE
5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
       0.741
rtcB
Hypothetical protein; Psort location: Cytoplasmic, score: 9.97; Belongs to the RtcB family.
     
 0.673
KRT34556.1
Hypothetical protein; KEGG: tbd:Tbd_2360 0.00016 metal dependent phosphohydrolase; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme); Psort location: Cytoplasmic, score: 8.96.
       0.664
hpf
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
       0.608
KRT34565.1
Putative aspartate transaminase; KEGG: aco:Amico_1183 1.4e-124 aminotransferase class I and II; K00812 aspartate aminotransferase; Psort location: Cytoplasmic, score: 9.97.
       0.404
Your Current Organism:
Acetomicrobium hydrogeniformans
NCBI taxonomy Id: 592015
Other names: A. hydrogeniformans ATCC BAA-1850, Acetomicrobium hydrogeniformans ATCC BAA-1850, Anaerobaculum hydrogeniforman DSM 22491, Anaerobaculum hydrogeniforman OS1, Anaerobaculum sp. OS1
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