STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmhAPhosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate; Belongs to the SIS family. GmhA subfamily. (193 aa)    
Predicted Functional Partners:
KRT34625.1
Putative histidinol-phosphatase; KEGG: aco:Amico_1357 2.7e-39 histidinol-phosphate phosphatase family protein; K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase; Psort location: Cytoplasmic, score: 9.97.
 
 0.999
KRT34981.1
KEGG: aco:Amico_0377 8.2e-63 PfkB domain protein; K03272 D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase; Psort location: Cytoplasmic, score: 9.97.
  
 0.989
KRT34628.1
Nucleotidyl transferase; KEGG: cac:CA_C3056 1.0e-39 nucleoside-diphosphate-sugar pyrophosphorylase; K00966 mannose-1-phosphate guanylyltransferase; Psort location: Cytoplasmic, score: 9.97.
  
 0.956
KRT34630.1
Lipopolysaccharide heptosyltransferase II; KEGG: aco:Amico_1486 5.8e-85 glycosyl transferase family 9; K02843 heptosyltransferase II; Psort location: Cytoplasmic, score: 9.26.
 
  
 0.954
dnaA
Replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
    
 
 0.859
KRT35902.1
Putative lipopolysaccharide heptosyltransferase II; KEGG: tai:Taci_1703 3.2e-36 glycosyl transferase family 9; K02841 heptosyltransferase I; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.837
KRT34627.1
Putative GDP-mannose 4,6-dehydratase; KEGG: aco:Amico_1359 3.3e-107 NAD-dependent epimerase/dehydratase; K01711 GDPmannose 4,6-dehydratase; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.828
KRT34626.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.769
KRT35664.1
Putative arabinose 5-phosphate isomerase; KEGG: aco:Amico_1493 2.1e-105 KpsF/GutQ family protein K06041; Psort location: Cytoplasmic, score: 8.96; Belongs to the SIS family. GutQ/KpsF subfamily.
     
 0.624
KRT35900.1
Heptosyltransferase; KEGG: lip:LI0698 1.2e-16 rfaF; ADP-heptose:LPS heptosyltransferase II; K02843 heptosyltransferase II.
 
  
 0.624
Your Current Organism:
Acetomicrobium hydrogeniformans
NCBI taxonomy Id: 592015
Other names: A. hydrogeniformans ATCC BAA-1850, Acetomicrobium hydrogeniformans ATCC BAA-1850, Anaerobaculum hydrogeniforman DSM 22491, Anaerobaculum hydrogeniforman OS1, Anaerobaculum sp. OS1
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