KRT34765.1 protein (Acetomicrobium hydrogeniformans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRT34765.1

CRISPR-associated RAMP protein, Csx10 family. (396 aa)

Predicted Functional Partners:

KRT34767.1

0.953

KRT34766.1

0.950

KRT34762.1

0.949

KRT34759.1

0.948

KRT34761.1

0.948

KRT34755.1

0.839

KRT34764.1

0.797

KRT34756.1

0.777

KRT34763.1

0.773

KRT34757.1

0.768

Your Current Organism:

Acetomicrobium hydrogeniformans

NCBI taxonomy Id: 592015
Other names: A. hydrogeniformans ATCC BAA-1850, Acetomicrobium hydrogeniformans ATCC BAA-1850, Anaerobaculum hydrogeniforman DSM 22491, Anaerobaculum hydrogeniforman OS1, Anaerobaculum sp. OS1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRT34755.1	KRT34756.1	HMPREF1705_04000	HMPREF1705_04001	CRISPR-associated protein, TM1812 family; Psort location: Cytoplasmic, score: 8.96.	CRISPR-associated protein, Csx13 family; Psort location: Cytoplasmic, score: 8.96.	0.784
KRT34755.1	KRT34757.1	HMPREF1705_04000	HMPREF1705_04002	CRISPR-associated protein, TM1812 family; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	0.773
KRT34755.1	KRT34759.1	HMPREF1705_04000	HMPREF1705_04004	CRISPR-associated protein, TM1812 family; Psort location: Cytoplasmic, score: 8.96.	CRISPR-associated RAMP protein; Psort location: Cytoplasmic, score: 8.96.	0.860
KRT34755.1	KRT34761.1	HMPREF1705_04000	HMPREF1705_04007	CRISPR-associated protein, TM1812 family; Psort location: Cytoplasmic, score: 8.96.	CRISPR-associated RAMP protein, SSO1426 family; Psort location: Cytoplasmic, score: 8.96.	0.863
KRT34755.1	KRT34762.1	HMPREF1705_04000	HMPREF1705_04008	CRISPR-associated protein, TM1812 family; Psort location: Cytoplasmic, score: 8.96.	CRISPR-associated RAMP protein, SSO1426 family; Psort location: Cytoplasmic, score: 8.96.	0.910
KRT34755.1	KRT34763.1	HMPREF1705_04000	HMPREF1705_04009	CRISPR-associated protein, TM1812 family; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein.	0.768
KRT34755.1	KRT34764.1	HMPREF1705_04000	HMPREF1705_04010	CRISPR-associated protein, TM1812 family; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	0.768
KRT34755.1	KRT34765.1	HMPREF1705_04000	HMPREF1705_04011	CRISPR-associated protein, TM1812 family; Psort location: Cytoplasmic, score: 8.96.	CRISPR-associated RAMP protein, Csx10 family.	0.839
KRT34755.1	KRT34766.1	HMPREF1705_04000	HMPREF1705_04012	CRISPR-associated protein, TM1812 family; Psort location: Cytoplasmic, score: 8.96.	CRISPR-associated RAMP protein.	0.845
KRT34755.1	KRT34767.1	HMPREF1705_04000	HMPREF1705_04013	CRISPR-associated protein, TM1812 family; Psort location: Cytoplasmic, score: 8.96.	HD domain protein; Psort location: Cytoplasmic, score: 8.96.	0.925
KRT34756.1	KRT34755.1	HMPREF1705_04001	HMPREF1705_04000	CRISPR-associated protein, Csx13 family; Psort location: Cytoplasmic, score: 8.96.	CRISPR-associated protein, TM1812 family; Psort location: Cytoplasmic, score: 8.96.	0.784
KRT34756.1	KRT34757.1	HMPREF1705_04001	HMPREF1705_04002	CRISPR-associated protein, Csx13 family; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	0.773
KRT34756.1	KRT34759.1	HMPREF1705_04001	HMPREF1705_04004	CRISPR-associated protein, Csx13 family; Psort location: Cytoplasmic, score: 8.96.	CRISPR-associated RAMP protein; Psort location: Cytoplasmic, score: 8.96.	0.773
KRT34756.1	KRT34761.1	HMPREF1705_04001	HMPREF1705_04007	CRISPR-associated protein, Csx13 family; Psort location: Cytoplasmic, score: 8.96.	CRISPR-associated RAMP protein, SSO1426 family; Psort location: Cytoplasmic, score: 8.96.	0.773
KRT34756.1	KRT34762.1	HMPREF1705_04001	HMPREF1705_04008	CRISPR-associated protein, Csx13 family; Psort location: Cytoplasmic, score: 8.96.	CRISPR-associated RAMP protein, SSO1426 family; Psort location: Cytoplasmic, score: 8.96.	0.768
KRT34756.1	KRT34763.1	HMPREF1705_04001	HMPREF1705_04009	CRISPR-associated protein, Csx13 family; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein.	0.768
KRT34756.1	KRT34764.1	HMPREF1705_04001	HMPREF1705_04010	CRISPR-associated protein, Csx13 family; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	0.768
KRT34756.1	KRT34765.1	HMPREF1705_04001	HMPREF1705_04011	CRISPR-associated protein, Csx13 family; Psort location: Cytoplasmic, score: 8.96.	CRISPR-associated RAMP protein, Csx10 family.	0.777
KRT34756.1	KRT34766.1	HMPREF1705_04001	HMPREF1705_04012	CRISPR-associated protein, Csx13 family; Psort location: Cytoplasmic, score: 8.96.	CRISPR-associated RAMP protein.	0.768
KRT34756.1	KRT34767.1	HMPREF1705_04001	HMPREF1705_04013	CRISPR-associated protein, Csx13 family; Psort location: Cytoplasmic, score: 8.96.	HD domain protein; Psort location: Cytoplasmic, score: 8.96.	0.791

page 1 of 6

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About