STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT35204.1Twitching motility protein; KEGG: apb:SAR116_2526 1.8e-58 type II secretion PilT K02669; Psort location: Cytoplasmic, score: 9.97. (358 aa)    
Predicted Functional Partners:
KRT35203.1
Bacterial type II secretion system protein F domain protein; KEGG: apb:SAR116_2517 5.2e-45 type II secretion system PilC K02653; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.963
KRT35205.1
Putative type IV-A pilus assembly ATPase PilB; KEGG: cco:CCC13826_1231 2.2e-101 L(+)-tartrate dehydratase subunit beta (L-TTD beta) K02454; Psort location: Cytoplasmic, score: 9.97.
 
  
0.888
KRT34867.1
KEGG: tai:Taci_1561 2.1e-41 peptidase A24A domain protein; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.851
KRT35191.1
Bacterial type II/III secretion system short domain protein; Psort location: OuterMembrane, score: 8.28.
 
   
 0.770
KRT35195.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.679
KRT35197.1
PQQ enzyme repeat protein; KEGG: shn:Shewana3_1087 3.8e-06 undecaprenol kinase, rRNA (guanine-N(1)-)-methyltransferase K02674.
 
   
 0.638
KRT35194.1
Hypothetical protein.
  
  
 0.615
KRT35200.1
Prepilin-type cleavage/methylation protein; Overlaps another CDS with the same product name.
     
 0.605
KRT35198.1
Hypothetical protein.
     
 0.604
KRT35201.1
Prepilin-type cleavage/methylation protein.
  
  
 0.571
Your Current Organism:
Acetomicrobium hydrogeniformans
NCBI taxonomy Id: 592015
Other names: A. hydrogeniformans ATCC BAA-1850, Acetomicrobium hydrogeniformans ATCC BAA-1850, Anaerobaculum hydrogeniforman DSM 22491, Anaerobaculum hydrogeniforman OS1, Anaerobaculum sp. OS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.