STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT35226.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (313 aa)    
Predicted Functional Partners:
panB-4
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
  
    0.630
KRT35228.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.587
KRT35225.1
Amino acid carrier protein; KEGG: pmj:P9211_06131 6.1e-74 Na+/alanine symporter K03310; Psort location: CytoplasmicMembrane, score: 10.00.
       0.556
KRT35224.1
Peptidase; KEGG: cbl:CLK_2276 5.9e-53 peptidase; Psort location: Cytoplasmic, score: 9.97.
       0.532
KRT35223.1
Asp/Glu/Hydantoin racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
     
 0.495
KRT34827.1
Phosphoribulokinase/uridine kinase family protein; KEGG: tai:Taci_1361 5.0e-182 AAA ATPase; K00876 uridine kinase; Psort location: Cytoplasmic, score: 9.97.
  
    0.445
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
   
    0.416
der
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
    0.413
KRT36403.1
Creatinase; KEGG: gtn:GTNG_2272 2.7e-128 Xaa-Pro aminopeptidase; K01271 X-Pro dipeptidase; Psort location: Cytoplasmic, score: 8.96.
 
     0.408
Your Current Organism:
Acetomicrobium hydrogeniformans
NCBI taxonomy Id: 592015
Other names: A. hydrogeniformans ATCC BAA-1850, Acetomicrobium hydrogeniformans ATCC BAA-1850, Anaerobaculum hydrogeniforman DSM 22491, Anaerobaculum hydrogeniforman OS1, Anaerobaculum sp. OS1
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