STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT35266.1KEGG: nph:NP3194A 2.0e-36 hit_1; histidine triad (HIT) hydrolase 1 (bis(5'-nucleosyl)-tetraphosphatase (asymmetrical)); Psort location: Cytoplasmic, score: 8.96. (166 aa)    
Predicted Functional Partners:
KRT35265.1
YigZ family protein; KEGG: tma:TM1713 2.4e-31 proline dipeptidase, putative; K01271 X-Pro dipeptidase; Psort location: Cytoplasmic, score: 9.97.
       0.818
KRT34941.1
Putative NAD-dependent deacetylase; KEGG: pmo:Pmob_1359 2.2e-78 silent information regulator protein Sir2; K12410 NAD-dependent deacetylase; Psort location: Cytoplasmic, score: 9.97.
 
 
  0.758
thrS
threonine--tRNA ligase; KEGG: aco:Amico_0703 1.5e-228 threonyl-tRNA synthetase K01868; Psort location: Cytoplasmic, score: 10.00; Belongs to the class-II aminoacyl-tRNA synthetase family.
    
 0.746
KRT34827.1
Phosphoribulokinase/uridine kinase family protein; KEGG: tai:Taci_1361 5.0e-182 AAA ATPase; K00876 uridine kinase; Psort location: Cytoplasmic, score: 9.97.
   
  0.734
KRT35264.1
BioY family protein; KEGG: oih:OB1717 1.3e-18 biotin synthase K03523; Psort location: CytoplasmicMembrane, score: 10.00.
       0.730
lysS
lysine--tRNA ligase; KEGG: tai:Taci_1118 1.7e-190 lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II; Psort location: Cytoplasmic, score: 10.00; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 0.717
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
     
  0.569
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
  0.533
KRT34923.1
KEGG: tai:Taci_1436 0. pyruvate ferredoxin/flavodoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase; Psort location: Cytoplasmic, score: 8.96.
   
   0.526
KRT34816.1
Hydrolase, NUDIX family; KEGG: noc:Noc_1415 8.2e-31 NUDIX hydrolase K01518; Psort location: Cytoplasmic, score: 8.96.
  
 0.514
Your Current Organism:
Acetomicrobium hydrogeniformans
NCBI taxonomy Id: 592015
Other names: A. hydrogeniformans ATCC BAA-1850, Acetomicrobium hydrogeniformans ATCC BAA-1850, Anaerobaculum hydrogeniforman DSM 22491, Anaerobaculum hydrogeniforman OS1, Anaerobaculum sp. OS1
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