STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT34309.1Aminotransferase, class I/II; KEGG: bur:Bcep18194_A5690 2.9e-58 aminotransferase, class I and II K00825; Psort location: Cytoplasmic, score: 9.97. (402 aa)    
Predicted Functional Partners:
KRT35184.1
KEGG: dtu:Dtur_1641 3.9e-72 prephenate dehydratase; K04093 chorismate mutase K04518; Psort location: Cytoplasmic, score: 9.97.
    
 0.789
KRT34989.1
Aminotransferase, class I/II; KEGG: pto:PTO0509 4.9e-81 GntR family transcriptional regulator K00837; Psort location: Cytoplasmic, score: 9.97.
  
  
 
0.744
KRT35140.1
Dehydrogenase, FMN-dependent; KEGG: tye:THEYE_A0075 4.4e-87 hydroxyacid oxidase 1; Psort location: Cytoplasmic, score: 9.97.
 
 0.586
KRT34308.1
KEGG: vap:Vapar_4267 0.00024 RND efflux system, outer membrane lipoprotein, NodT family K00694; Psort location: OuterMembrane, score: 9.93.
       0.549
KRT36229.1
Dinuclear metal center protein, YbgI family; KEGG: hip:CGSHiEE_02770 0.0011 seryl-tRNA synthetase; Psort location: Cytoplasmic, score: 8.96.
  
    0.509
trpB
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
 
 0.451
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
   
 
 0.451
KRT35472.1
KEGG: rru:Rru_A0914 3.1e-102 aldehyde dehydrogenase K04021; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.439
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
      0.439
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
   
 
 0.431
Your Current Organism:
Acetomicrobium hydrogeniformans
NCBI taxonomy Id: 592015
Other names: A. hydrogeniformans ATCC BAA-1850, Acetomicrobium hydrogeniformans ATCC BAA-1850, Anaerobaculum hydrogeniforman DSM 22491, Anaerobaculum hydrogeniforman OS1, Anaerobaculum sp. OS1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.