STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ESL04258.1S1 RNA binding domain protein; Psort location: Cytoplasmic, score: 8.87; Belongs to the CvfB family. (283 aa)    
Predicted Functional Partners:
ESL04259.1
Acyl-ACP thioesterase; KEGG: lsa:LSA0345 1.6e-14 putative acyl-ACP thioesterase K01071; Psort location: Cytoplasmic, score: 8.87.
 
     0.866
recD2
Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
  
    0.764
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.683
ESL04256.1
HAD phosphatase, family IIIA; KEGG: saa:SAUSA300_1557 1.3e-21 hydrolase, HAD-superfamily, subfamily IIIA K01112; Psort location: Cytoplasmic, score: 8.87.
       0.683
ESL04257.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.655
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.617
aroD
3-dehydroquinate dehydratase, type I; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family.
       0.617
ESL04261.1
Hypothetical protein; KEGG: ilo:IL1139 2.6e-05 flgJ; flagellum-specific muramidase K02395.
       0.533
ESL04262.1
Flagellar hook-basal body protein.
       0.533
ESL04263.1
Flagellar hook-basal body protein; Psort location: Cytoplasmic, score: 8.87.
       0.504
Your Current Organism:
Catonella morbi
NCBI taxonomy Id: 592026
Other names: C. morbi ATCC 51271, Catonella morbi ATCC 51271, Catonella morbi str. ATCC 51271, Catonella morbi strain ATCC 51271
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